How to Pay Your Non-Resident Employee Working for Your Estonian Entity

Paying a non-resident employee in Estonia involves understanding legal and tax obligations, setting up compliant payroll, and using digital solutions. Ensure proper registration and consider tax treaties.
How to Pay Your Non-Resident Employee Working for Your Estonian Entity
Photo by Mika Baumeister / Unsplash

Paying a non-resident employee working for your Estonian entity involves navigating legal, tax, and procedural aspects to ensure compliance and efficiency. Estonia, with its advanced digital infrastructure and business-friendly environment, is an attractive destination for businesses worldwide. This article will guide you through the process of paying your non-resident employee, focusing on key steps, tax considerations, and practical tips.


Employment Contract

A comprehensive employment contract is essential. This contract should outline the terms of employment, responsibilities, and compensation, complying with both Estonian labor laws and the employee’s local regulations. It's advisable to have the contract reviewed by legal professionals in both jurisdictions to ensure it meets all regulatory requirements.

Establishing the Employment Relationship

Ensure the employment relationship is properly established. This includes registering the employee with the Estonian Commercial Register and obtaining the necessary permits if applicable. The registration process is streamlined and can be done online, which is especially beneficial for e-residents.

Salary and Taxes

The salary paid to a non-resident employee is subject to Estonian personal income tax. The company must withhold this tax and report it to the Estonian Tax and Customs Board (ETCB). However, the employee's tax obligations in their home country must also be considered. Consulting with a tax advisor who understands both Estonian and the employee's home country tax laws is crucial to ensure compliance.

Double Taxation Treaties

Estonia has double taxation treaties with many countries, which can affect the tax obligations of non-resident employees. These treaties aim to prevent double taxation and may provide tax relief in either Estonia or the employee's home country. The employee may need to provide proof of tax residency to benefit from these treaties.

Social Security Contributions

Social security contributions are mandatory in Estonia. The employer must pay these contributions, covering health insurance, pension, and unemployment insurance. These contributions are calculated based on the employee’s salary. Understanding these obligations is crucial for budgeting and financial planning.


Practical Steps to Pay Your Non-Resident Employee

Registering the Employment

Register the non-resident employee with the ETCB. This registration must be completed before the employee starts receiving payments. The registration process involves submitting personal details, tax residency status, and contract information. This step is critical to ensure compliance with all employment regulations.

Payroll System

Set up a payroll system that complies with Estonian regulations. The payroll system should calculate the gross salary, withhold the necessary taxes, and make net salary payments to the employee. Several online payroll service providers can assist with this process, ensuring accuracy and compliance.

  • SimplBooks: This software is easy to use and adapted to the specific accounting rules applicable to Estonia.
  • Merit Tarkvara: An award-winning accounting software, also adapted to Estonian-specific accounting rules. Though we haven't used it ourselves, it appears to be a good alternative based on our research.

Payment Process

Payments to the non-resident employee should be made through a bank transfer to ensure transparency and proper record-keeping. Ensure that the payments are made regularly and in accordance with the employment contract. Utilizing a digital bank, such as TransferWise (Wise) or Revolut, can simplify international transactions and reduce fees.

Reporting and Compliance

Monthly and annual reporting to the ETCB is required. The company must submit monthly payroll declarations and an annual tax return. Accurate and timely reporting helps avoid penalties and ensures compliance with Estonian tax laws. Using digital tools like the ETCB's e-MTA portal can streamline this process.

Utilize Digital Solutions

Estonia's e-Residency program and digital solutions for businesses can streamline operations and ensure compliance. For instance, the Estonian digital ID can be used to sign documents electronically, access government portals, and manage business operations remotely.

Stay Informed

Keeping up-to-date with changes in Estonian tax laws and regulations is vital. Regularly consult with a tax advisor or legal expert to stay informed and adapt to any new requirements. Subscribing to newsletters from the Estonian Tax and Customs Board or joining relevant business forums can help you stay updated.


Additional Considerations

Currency and Exchange Rates

When paying non-resident employees, consider the impact of currency exchange rates. Fluctuations can affect the net salary your employee receives. Using financial services that offer favorable exchange rates and low transfer fees can mitigate these issues.

Health and Safety Regulations

Ensure compliance with health and safety regulations in both Estonia and the employee’s home country. This includes providing necessary health insurance coverage and adhering to workplace safety standards, even if the employee works remotely.

Communication and Coordination

Effective communication and coordination are essential when managing non-resident employees. Utilize collaboration tools and maintain regular contact to ensure alignment on work expectations, performance, and any administrative requirements.


Paying a non-resident employee working for your Estonian entity involves several steps, from setting up the right contracts and payroll systems to ensuring compliance with tax laws. By understanding the legal framework, tax considerations, and practical steps involved, you can efficiently manage these payments and focus on your business's growth. Leveraging Estonia's digital infrastructure and professional services can further simplify the process and ensure smooth operations.

By incorporating these steps and tips, you can manage the process effectively and take full advantage of Estonia's advanced digital ecosystem and business-friendly environment.


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